BCRC Strain Collection Catalog & Shopping Cart

  Home / BCRC Content / 13402 / 

Return

  Research Article

The information shown in this page was generated using the cross-referenced linkage within public domain database between their strains and BCRC related strains. Usually the information provided from public domain databases varies with different confidences and errors, BCRC provides the related information here at best effort, but BCRC doesn't take the responsibility about the correctness of the information provided here.

1. Meyers  PR,     ( 2015 )

Analysis of recombinase A (recA/RecA) in the actinobacterial family Streptosporangiaceae and identification of molecular signatures.

Systematic and applied microbiology 38 (8)
PMID : 26507967  :   DOI  :   10.1016/j.syapm.2015.10.001    
Abstract >>
The family Streptosporangiaceae (suborder Streptosporangineae) comprises 13 genera and 100 species with validly published names. In a recent study, gyrB gene sequences were obtained for members of the family Streptosporangiaceae and the GyrB amino acid sequences were analysed for molecular signatures. In this study, recA gene sequences (895nt) were determined for the type strains of members of the family Streptosporangiaceae. The sequences used represent 81% of the full-length recA gene of Streptosporangium roseum DSM 43021(T). The recA gene sequences were used for phylogenetic analyses and the trees were compared to the corresponding 16S-rRNA and gyrB gene trees. RecA amino acid alignments (298 amino acids) were generated and inspected for unique amino acid signatures to distinguish the genera in the family from each other. As was observed for the gyrB gene trees, the recA gene trees generally supported the division of the members of the family Streptosporangiaceae into 13 genera. The genus Nonomuraea was not monophyletic in any of the recA gene trees, while the genera Planomonospora and Streptosporangium were not monophyletic in the maximum likelihood and maximum parsimony trees. The gyrB-recA concatenated-gene tree was more robust than the recA gene tree, with 63 nodes in the gyrB-recA tree having bootstrap values ?95%. The only insertions in the recA gene sequences were inteins identified in the type strains of Acrocarpospora phusangensis, Acrocarpospora pleiomorpha and Microbispora mesophila. Examination of the RecA sequence alignments for genus-specific amino acid sequences showed that the genera Herbidospora, Planobispora, Planomonospora and Streptosporangium contain unique amino acid sequences that distinguish these genera from all other genera in the family Streptosporangiaceae. The results of this investigation extend the results of the GyrB study and will be useful in future taxonomic studies in the family Streptosporangiaceae by providing additional genus-specific molecular signatures.
KeywordMeSH Terms
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Recombinase A
Streptosporangiaceae
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Inteins
Molecular signatures
Recombinase A
Streptosporangiaceae
Streptosporangineae
recA
Genetic Variation
2. Meyers  PR,     ( 2014 )

Gyrase subunit B amino acid signatures for the actinobacterial family Streptosporangiaceae.

Systematic and applied microbiology 37 (4)
PMID : 24423454  :   DOI  :   10.1016/j.syapm.2013.12.002    
Abstract >>
Higher order taxonomic assignments (family level and above) in the phylum Actinobacteria are currently based only on 16S-rRNA gene sequence analyses. Additional molecular markers need to be identified to increase the number of reference points for defining actinobacterial families and other higher taxa. Furthermore, since most novel actinobacterial taxa are defined at the level of species and genera, it is necessary to define molecular signatures at the genus level to enhance the robustness of genus descriptions. The current use of chemotaxonomic markers to define genera could be improved by the identification of genus-specific molecular signatures. In this study, GyrB amino acid sequences for members of the family Streptosporangiaceae were analysed for molecular signatures. Phylogenetic analyses showed that the gyrB gene tree supported the composition of the currently recognised genera in this family. The catalytically important amino acids were identified in the GyrB sequences, as were the GHKL superfamily motifs. Examination of GyrB protein sequence alignments revealed that there are genus-specific sequences for most of the multi-species genera and genus-defining amino acid insertions for the genera Herbidospora and Microbispora. Furthermore, there are GyrB signature amino acids which distinguish the family Streptosporangiaceae from the family Nocardiopsaceae.
KeywordMeSH Terms
Streptosporangiaceae
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
GHKL superfamily
Gyrase subunit B
Molecular signatures
Nocardiopsaceae
Streptosporangiaceae
Streptosporangineae
gyrB
Amino Acid Sequence

331, Shih-Pin Rd., Hsinchu 30062, Taiwan

Phone: +886-3-5223191

E-mail: bcrcweb@firdi.org.tw

web maintainance: +886-3-5223191 ext 593

Copyright © 2018.BCRC All rights reserved.The duplication or use of information and data such as texts or images or any linkage the website at the "bcrc.firdi.org.tw" is only permitted with the indication of the source or with prior approval by the BCRC(Bioresource Collection and Research Center).