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1. Demirev  AV, Lee  JS, Kim  SD, Nam  DH, Yoo  A,     ( 2006 )

Cloning and analysis of a type II polyketide synthase gene cluster from Streptomyces toxytricini NRRL 15,443.

Journal of microbiology (Seoul, Korea) 44 (6)
PMID : 17205043  :  
Abstract >>
A standard type II polyketide synthase (PKS) gene cluster was isolated while attempting to clone the biosynthetic gene for lipstatin from Streptomyces toxytricini NRRL 15,443. This result was observed using a Southern blot of a PstI-digested S. toxytricini chromosomal DNA library with a 444 bp amplified probe of a ketosynthase (KS) gene fragment. Four open reading frames [thioesterase (TE), beta-ketoacyl systhase (KAS), chain length factor (CLF), and acyl carrier protein (ACP)], were identified through the nucleotide sequence determination and analysis of a 4.5 kb cloned DNA fragment. In order to confirm the involvement of a cloned gene in lipstatin biosynthesis, a gene disruption experiment for the KS gene was performed. However, the resulting gene disruptant did not show any significant difference in lipstatin production when compared to wild-type S. toxytricini. This result suggests that lipstatin may not be synthesized by a type II PKS.
KeywordMeSH Terms
Cloning, Molecular
Multigene Family
2. Zeng  J, Zhan  J,     ( 2011 )

Characterization of a tryptophan 6-halogenase from Streptomyces toxytricini.

Biotechnology letters 33 (8)
PMID : 21424165  :   DOI  :   10.1007/s10529-011-0595-7    
Abstract >>
Tryptophan (Trp) halogenases are found in various bacteria and play an important role in natural product biosynthesis. Analysis of the genome of Streptomyces toxytricini NRRL 15443 revealed an ORF, stth, encoding a putative Trp halogenase within a non-ribosomal peptide synthetase gene cluster. This gene was cloned into pET28a and functionally overexpressed in Escherichia coli. The enzyme halogenated both L - and D -Trp to yield the corresponding 6-chlorinated derivatives. The optimum activity was at 40�XC and pH 6 giving k (cat) /K (M) value of STTH of 72,000 min(-1) M(-1). The enzyme also used bromide to yield 6-bromo-Trp.
KeywordMeSH Terms
3. Demirev  AV, Khanal  A, Sedai  BR, Lim  SK, Na  MK, Nam  DH,     ( 2010 )

The role of acyl-coenzyme A carboxylase complex in lipstatin biosynthesis of Streptomyces toxytricini.

Applied microbiology and biotechnology 87 (3)
PMID : 20437235  :   DOI  :   10.1007/s00253-010-2587-2     PMC  :   PMC2886142    
Abstract >>
Streptomyces toxytricini produces lipstatin, a specific inhibitor of pancreatic lipase, which is derived from two fatty acid moieties with eight and 14 carbon atoms. The pccB gene locus in 10.6 kb fragment of S. toxytricini chromosomal DNA contains three genes for acyl-coenzyme A carboxylase (ACCase) complex accA3, pccB, and pccE that are presumed to be involved in secondary metabolism. The pccB gene encoding a beta subunit of ACCase [carboxyltransferase (CT)] was identified upstream of pccE gene for a small protein of epsilon subunit. The accA3 encoding the alpha subunit of ACCase [biotin carboxylase (BC)] was also identified downstream of pccB gene. When the pccB and pccE genes were inactivated by homologous recombination, the lipstatin production was reduced as much as 80%. In contrast, the accumulation of another compound, tetradeca-5.8-dienoic acid (the major lipstatin precursor), was 4.5-fold increased in disruptant compared with wild-type. It implies that PccB of S. toxytricini is involved in the activation of octanoic acid to hexylmalonic acid for lipstatin biosynthesis.
KeywordMeSH Terms
4. Demirev  AV, Lee  JS, Sedai  BR, Ivanov  IG, Nam  DH,     ( 2009 )

Identification and characterization of acetyl-CoA carboxylase gene cluster in Streptomyces toxytricini.

Journal of microbiology (Seoul, Korea) 47 (4)
PMID : 19763422  :   DOI  :   10.1007/s12275-009-0135-5    
Abstract >>
The gene locus for acetyl-CoA carboxylase (ACC) involved in the primary metabolism was identified from the genomic library of Streptomyces toxytricini which produces a lipase inhibitor lipstatin. The 7.4 kb cloned gene was comprised of 5 ORFs including accD1, accA1, hmgL, fadST1, and stsF. In order to confirm the biochemical characteristics of AccA1, the gene was overexpressed in Escherichia coli cells, and the recombinant protein was purified through Ni2+ affinity chromatography. Because most of the expressed AccAl was biotinylated by host E. coli BirA in the presence of D-biotin, the non-biotinylated apo-AccA1 was purified after gene induction without D-biotin, followed by exclusion of holo-AccA1 using streptavidin beads. The separated apo-AccA1 was post-translationally biotinylated by S. toxytricini biotin apo-protein ligase (BPL) in a time- and enzyme-dependent manner. This result supports that this gene cluster of S. toxytricini encodes the functional ACC enzyme subunits to be biotinylated.
KeywordMeSH Terms
5. Shepherd  SA, Menon  BR, Fisk  H, Struck  AW, Levy  C, Leys  D, Micklefield  J,     ( 2016 )

A Structure-Guided Switch in the Regioselectivity of a Tryptophan Halogenase.

Chembiochem : a European journal of chemical biology 17 (9)
PMID : 26840773  :   DOI  :   10.1002/cbic.201600051     PMC  :   PMC5071727    
Abstract >>
Flavin-dependent halogenases are potentially useful biocatalysts for the regioselective halogenation of aromatic compounds. Haloaromatic compounds can be utilised in the synthesis and biosynthesis of pharmaceuticals and other valuable products. Here we report the first X-ray crystal structure of a tryptophan 6-halogenase (SttH), which enabled key residues that contribute to the regioselectivity in tryptophan halogenases to be identified. Structure-guided mutagenesis resulted in a triple mutant (L460F/P461E/P462T) that exhibited a complete switch in regioselectivity; with the substrate 3-indolepropionate 75 % 5-chlorination was observed with the mutant in comparison to 90 % 6-chlorination for the wild-type SttH. This is the first clear example of how regiocomplementary halogenases can be created from a single parent enzyme. The biocatalytic repertoire of SttH was also expanded to include a range of indolic and non-indolic substrates.
KeywordMeSH Terms
aryl halides
biocatalysis
halogenation
mutagenesis
regioselectivity
6. Bai  T, Zhang  D, Lin  S, Long  Q, Wang  Y, Ou  H, Kang  Q, Deng  Z, Liu  W, Tao  M,     ( 2014 )

Operon for biosynthesis of lipstatin, the Beta-lactone inhibitor of human pancreatic lipase.

Applied and environmental microbiology 80 (24)
PMID : 25239907  :   DOI  :   10.1128/AEM.01765-14     PMC  :   PMC4249243    
Abstract >>
Lipstatin, isolated from Streptomyces toxytricini as a potent and selective inhibitor of human pancreatic lipase, is a precursor for tetrahydrolipstatin (also known as orlistat, Xenical, and Alli), the only FDA-approved antiobesity medication for long-term use. Lipstatin features a 2-hexyl-3,5-dihydroxy-7,10-hexadecadienoic-�]-lactone structure with an N-formyl-l-leucine group attached as an ester to the 5-hydroxy group. It has been suggested that the �\-branched 3,5-dihydroxy fatty acid �]-lactone moiety of lipstatin in S. toxytricini is derived from Claisen condensation between two fatty acid substrates, which are derived from incomplete oxidative degradation of linoleic acid based on feeding experiments. In this study, we identified a six-gene operon (lst) that was essential for the biosynthesis of lipstatin by large-deletion, complementation, and single-gene knockout experiments. lstA, lstB, and lstC, which encode two �]-ketoacyl-acyl carrier protein synthase III homologues and an acyl coenzyme A (acyl-CoA) synthetase homologue, were indicated to be responsible for the generation of the �\-branched 3,5-dihydroxy fatty acid backbone. Subsequently, the nonribosomal peptide synthetase (NRPS) gene lstE and the putative formyltransferase gene lstF were involved in decoration of the �\-branched 3,5-dihydroxy fatty acid chain with an N-formylated leucine residue. Finally, the 3�]-hydroxysteroid dehydrogenase-homologous gene lstD might be responsible for the reduction of the �]-keto group of the biosynthetic intermediate, thereby facilitating the formation of the unique �]-lactone ring.
KeywordMeSH Terms
Operon
7. Zhou  H, Wang  Y, Yu  Y, Bai  T, Chen  L, Liu  P, Guo  H, Zhu  C, Tao  M, Deng  Z,     ( 2012 )

A non-restricting and non-methylating Escherichia coli strain for DNA cloning and high-throughput conjugation to Streptomyces coelicolor.

Current microbiology 64 (2)
PMID : 22105763  :   DOI  :   10.1007/s00284-011-0048-5    
Abstract >>
Escherichia coli strains are used in secondary metabolism research for DNA cloning and transferring plasmids by intergeneric conjugation. Non-restricting strains are desirable for DNA cloning and non-methylating strains are beneficial for transferring DNA to methyl-restricting hosts, like Streptomyces coelicolor. We have constructed a non-methylating E. coli strain, JTU007, by deleting the DNA methylation genes dcm and dam from the widely used non-restricting cloning host DH10B. JTU007 was tested as donor for the conjugative transfer of a plasmid containing the 39 kb actinorhodin biosynthesis gene cluster to S. lividans and S. coelicolor. The Dcm? Dam? strain JTU007 transferred DNA into S. coelicolor A(3)2 derivatives at high frequency. To demonstrate the usefulness of E. coli JTU007 for gene cloning, we constructed a comprehensive S. toxytricini genomic cosmid library, and transferred it using high-throughput conjugation to the methyl-restricting S. coelicolor. One of the cosmid clones produced a brown pigment, and the clone was revealed to carry a tyrosinase operon. JTU007 is more useful than ET12567 because it does not restrict methylated DNA in primary cloning, and gives higher transformation and cosmid infection frequencies.
KeywordMeSH Terms
Cloning, Molecular
Conjugation, Genetic
8. Zeng  J, Decker  R, Zhan  J,     ( 2012 )

Biochemical characterization of a type III polyketide biosynthetic gene cluster from Streptomyces toxytricini.

Applied biochemistry and biotechnology 166 (4)
PMID : 22187221  :   DOI  :   10.1007/s12010-011-9490-x    
Abstract >>
A type III polyketide biosynthetic gene cluster has been discovered in the industrially important strain Streptomyces toxytricini NRRL 15443, including four genes stp450-1, stts, stp450-2, and stmo. The stts gene encodes a putative type III polyketide synthase that is homologous to RppA, a 1,3,6,8-tetrahydroxynaphthalene (THN) synthase from Streptomyces griseus. The deduced protein product of stmo resembles the cupin-containing monooxygenase MomA from Streptomyces antibioticus that oxidizes THN into flaviolin. Two cytochrome P450s (CYPs), StP450-1 and StP450-2, are present in the gene cluster. StTS was overexpressed in Escherichia coli BL21(DE3) and identified as a THN synthase. The synthesized THN can be easily oxidized into flaviolin by air. Both CYPs were reconstituted in E. coli BL21(DE3) and can oxidize flaviolin to form oligomers. The k(cat)/K(m) values for StP450-1 and StP450-2 were 0.28 and 0.71 min?? mM??, respectively. UV irradiation test showed that expression of StTS in E. coli BL21(DE3) significantly protects the cells from UV radiation, and coexpression of StTS and StP450-1 provides even stronger protection.
KeywordMeSH Terms

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