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1. Rong  X, Huang  Y,     ( 2010 )

Taxonomic evaluation of the Streptomyces griseus clade using multilocus sequence analysis and DNA-DNA hybridization, with proposal to combine 29 species and three subspecies as 11 genomic species.

International journal of systematic and evolutionary microbiology 60 (Pt 3)
PMID : 19656940  :   DOI  :   10.1099/ijs.0.012419-0    
Abstract >>
Streptomyces griseus and related species form the biggest but least well-defined clade in the whole Streptomyces 16S rRNA gene tree. Multilocus sequence analysis (MLSA) has shown promising potential for refining Streptomyces systematics. In this investigation, strains of 18 additional S. griseus clade species were analysed and data from a previous pilot study were integrated in a larger MLSA phylogeny. The results demonstrated that MLSA of five housekeeping genes (atpD, gyrB, recA, rpoB and trpB) is better than the previous six-gene scheme, as it provides equally good resolution and stability and is more cost-effective; MLSA using three or four of the genes also shows good resolution and robustness for differentiating most of the strains and is therefore of value for everyday use. MLSA is more suitable for discriminating strains that show >99 % 16S rRNA gene sequence similarity. DNA-DNA hybridization (DDH) between strains with representative MLSA distances revealed a strong correlation between the data of MLSA and DDH. The 70 % DDH value for current species definition corresponds to a five-gene MLSA distance of 0.007, which could be considered as the species cut-off for the S. griseus clade. It is concluded that the MLSA procedure can be a practical, reliable and robust alternative to DDH for the identification and classification of streptomycetes at the species and intraspecies levels. Based on the data from MLSA and DDH, as well as cultural and morphological characteristics, 18 species and three subspecies of the S. griseus clade are considered to be later heterotypic synonyms of 11 genomic species: Streptomyces griseinus and Streptomyces mediolani as synonyms of Streptomyces albovinaceus; Streptomyces praecox as a synonym of Streptomyces anulatus; Streptomyces olivoviridis as a synonym of Streptomyces atroolivaceus; Streptomyces griseobrunneus as a synonym of Streptomyces bacillaris; Streptomyces cavourensis subsp. washingtonensis as a synonym of Streptomyces cyaneofuscatus; Streptomyces acrimycini, Streptomyces baarnensis, Streptomyces caviscabies and Streptomyces flavofuscus as synonyms of Streptomyces fimicarius; Streptomyces flavogriseus as a synonym of Streptomyces flavovirens; Streptomyces erumpens, 'Streptomyces ornatus' and Streptomyces setonii as synonyms of Streptomyces griseus; Streptomyces graminofaciens as a synonym of Streptomyces halstedii; Streptomyces alboviridis, Streptomyces griseus subsp. alpha, Streptomyces griseus subsp. cretosus and Streptomyces luridiscabiei as synonyms of Streptomyces microflavus; and Streptomyces californicus and Streptomyces floridae as synonyms of Streptomyces puniceus.
KeywordMeSH Terms
2. Vandré  DD, Zaheer  A, Squier  S, Montgomery  R,     ( 1982 )

Largomycin: preparation, properties, and structure.

Biochemistry 21 (20)
PMID : 7138848  :   DOI  :   10.1021/bi00263a037    
Abstract >>
Largomycin has been purified to homogeneity by chromatography on hydroxylapatite whereby carbohydrate and protease impurities were removed. Largomycin is an acidic protein (pI 4.13, molecular weight 29300) which forms a dimer in phosphate buffer. An N-terminal amino acid sequence analysis from the amino-terminal residue gave, for the first 32 residues, Asp-Ile-Leu-Ile-Ala-Gly-Ala-Thr-Gly-Asn-Val-Gly-Lys-Pro-Leu-Val-Glu-Gly-Leu-Leu - Ala-Ala-Gly-Lys-Pro-Val-Arg-Ala-Leu-Thr-Arg-Asn... The sequence from the carboxyl terminus was -Ala-Ala-Leu-Phe-OH with threonine, valine, and glutamic acid being released upon prolonged digestion. The same amino acid sequences were found for largomycin prepared from either the culture broth or the mycelium of Streptomyces pluricolorescens. The similarities extended to the other physical properties, the antimicrobial activity against Staphylococcus aureus and Sarcina lutea, and the antitumor activity against KB cells. Largomycin inhibits the biosynthesis of DNA and RNA. An iodinated derivative did not bind to KB cells. The antimicrobial activity was lost following ultraviolet irradiation, protection against which was not afforded by p-aminobenzoic acid.
KeywordMeSH Terms
Anti-Bacterial Agents
Glycopeptides
3. Hu  Y, Sun  F, Liu  W,     ( 2018 )

The heat shock protein 70 gene as a new alternative molecular marker for the taxonomic identification of Streptomyces strains.

AMB Express 8 (1)
PMID : 30203150  :   DOI  :   10.1186/s13568-018-0674-4     PMC  :   PMC6134474    
Abstract >>
With the developments in taxonomy, the classically used highly conserved 16S rRNA molecular marker has shown some disadvantages among closely related species. For further taxonomic studies of the prokaryotes, specific PCR primers were designed from two conserved regions in the amino acid sequences of the 70-kDa heat shock protein sourced from 20 different genera in actinomycetes. These were used for the amplification of the hsp70 genes in 16 Streptomyces strains. Then, we investigated the phylogenetic relationships among these Streptomyces strains and compared the tree topology based on the hsp70 gene with those based on the previously used markers (16S rRNA and gyrB). To our knowledge, this is the first use of the hsp70 gene as a molecular marker for the taxonomic identification of Streptomyces.
KeywordMeSH Terms
16S rRNA
Molecular marker
Taxonomic identification
gyrB
hsp70
16S rRNA
Molecular marker
Taxonomic identification
gyrB
hsp70
16S rRNA
Molecular marker
Taxonomic identification
gyrB
hsp70
16S rRNA
Molecular marker
Taxonomic identification
gyrB
hsp70
16S rRNA
Molecular marker
Taxonomic identification
gyrB
hsp70
16S rRNA
Molecular marker
Taxonomic identification
gyrB
hsp70
16S rRNA
Molecular marker
Taxonomic identification
gyrB
hsp70
16S rRNA
Molecular marker
Taxonomic identification
gyrB
hsp70
16S rRNA
Molecular marker
Taxonomic identification
gyrB
hsp70
16S rRNA
Molecular marker
Taxonomic identification
gyrB
hsp70
16S rRNA
Molecular marker
Taxonomic identification
gyrB
hsp70

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