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1. Lin  SY, Shen  FT, Young  LS, Zhu  ZL, Chen  WM, Young  CC,     ( 2012 )

Azospirillum formosense sp. nov., a diazotroph from agricultural soil.

International journal of systematic and evolutionary microbiology 62 (Pt 5)
PMID : 21742820  :   DOI  :   10.1099/ijs.0.030585-0     DOI  :   10.1099/ijs.0.030585-0    
Abstract >>
A gram-negative, spiral or rod-shaped, non-spore-forming diazotrophic bacterium, designated CC-Nfb-7(T), was isolated from agricultural soil in Yunlin County, Taiwan. 16S rRNA gene sequence analysis showed that strain CC-Nfb-7(T) was most closely related to Azospirillum brasilense DSM 1690(T) (97.4 % 16S rRNA gene sequence similarity), Azospirillum rugosum IMMIB AFH-6(T) (96.8 %) and Azospirillum oryzae JCM 21588(T) (96.6 %); <96.5 % 16S rRNA gene sequence similarity was found with all other members of the genus Azospirillum. DNA-DNA relatedness between strain CC-Nfb-7(T) and A. brasilense DSM 1690(T), A. rugosum DSM 19657(T) and A. oryzae JCM 21588(T) was 38.9, 30.1 and 31.8 %, respectively. The respiratory quinone was ubiquinone Q-10. The major fatty acids were summed feature 8 (consisting of C(18 : 1)�s7c and/or C(18 : 1)�s6c), summed feature 3 (consisting of C(16 : 1)�s7c and/or C(16 : 1)�s6c), summed feature 2 (consisting of C(14 : 0) 3-OH and/or iso-C(16 : 1) I), C(16 : 0), C(18 : 0) 2-OH and C(16 : 0) 3-OH. The polar lipids consisted mainly of phosphatidylglycerol, phosphatidylcholine and one unidentified phospholipid. Furthermore, moderate amounts of phosphatidylethanolamine, phosphatidyldimethylethanolamine and one unidentified aminophospholipid were also detected. Strain CC-Nfb-7(T) could be distinguished from members of phylogenetically related species by differences in phenotypic properties. On the basis of morphological, chemotaxonomic and phylogenetic data, strain CC-Nfb-7(T) represents a novel species within the genus Azospirillum, for which we propose the name Azospirillum formosense sp. nov. The type strain is CC-Nfb-7(T) (= BCRC 80273(T) = JCM 17639(T) = DSM 24137(T)).
KeywordMeSH Terms
Soil Microbiology
Soil Microbiology
2. Maroniche  GA, García  JE, Salcedo  F, Creus  CM,     ( 2017 )

Molecular identification of Azospirillum spp.: Limitations of 16S rRNA and qualities of rpoD as genetic markers.

Microbiological research 195 (N/A)
PMID : 28024520  :   DOI  :   10.1016/j.micres.2016.11.009    
Abstract >>
Since their discovery, plant-growth promoting rhizobacteria from the genus Azospirillum have been subjected to intensive research due to their biotechnological potential as crop inoculants. Phylogenetic analysis of Azospirillum spp. is carried out by 16S rRNA sequencing almost exclusively, but inconsistencies and low confidence often arise when working with close species. In this work, it was observed that these difficulties might be explained by a high number of rRNA operons with considerable inter-genic variability within Azospirillum genomes. To search for alternative genetic markers from a list of housekeeping genes, the correlation between pairwise gene and whole-genome similarities was examined. Due to its good performance, rpoD was selected for further analyses. Genus-specific primers for the PCR-amplification and sequencing of rpoD from Azospirillum spp. were designed and tested on 16 type strains of different species. The sequences obtained were used for inferring a phylogenetic tree of the genus, which was in turn used as a reference to successfully identify a collection of 31 azospirilla isolated from many different locations of Argentine. In addition, several strains that might represent novel species were detected. The results indicate that the sequencing of rpoD is a suitable alternative method for a confident molecular identification in Azospirillum spp.
KeywordMeSH Terms
Genome similarity
Genotyping
Phylogeny
Rhizobacteria
Genome similarity
Genotyping
Phylogeny
Rhizobacteria
Genome similarity
Genotyping
Phylogeny
Rhizobacteria
Genome similarity
Genotyping
Phylogeny
Rhizobacteria
Genome similarity
Genotyping
Phylogeny
Rhizobacteria
Genome similarity
Genotyping
Phylogeny
Rhizobacteria
Genome similarity
Genotyping
Phylogeny
Rhizobacteria
Genome similarity
Genotyping
Phylogeny
Rhizobacteria
Genetic Markers
Genotyping Techniques

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