BCRC Strain Collection Catalog & Shopping Cart

  Home / BCRC Content / 11223 / 

Return

  Taxonomy Citation

The information shown in this page was generated using the cross-referenced linkage within public domain database between their strains and BCRC related strains. Usually the information provided from public domain databases varies with different confidences and errors, BCRC provides the related information here at best effort, but BCRC doesn't take the responsibility about the correctness of the information provided here.

Taxonomy Citation ID Reference
47532 Aliyu  H, Lebre  P, Blom  J, Cowan  D, De Maayer  P,     ( 2016 )

Phylogenomic re-assessment of the thermophilic genus Geobacillus.

Systematic and applied microbiology 39 (8)
PMID : 27726901 DOI  :   10.1016/j.syapm.2016.09.004    
Abstract >>
Geobacillus is a genus of Gram-positive, aerobic, spore-forming obligate thermophiles. The descriptions and subsequent affiliations of the species in the genus have mostly been based on polyphasic taxonomy rules that include traditional sequence-based methods such as DNA-DNA hybridization and comparison of 16S rRNA gene sequences. Currently, there are fifteen validly described species within the genus. The availability of whole genome sequences has provided an opportunity to validate and/or re-assess these conventional estimates of genome relatedness. We have applied whole genome approaches to estimate the phylogenetic relatedness among the sixty-three Geobacillus strains for which genome sequences are currently publicly available, including the type strains of eleven validly described species. The phylogenomic metrics AAI (Average Amino acid Identity), ANI (Average Nucleotide Identity) and dDDH (digital DNA-DNA hybridization) indicated that the current genus Geobacillus is comprised of sixteen distinct genomospecies, including several potentially novel species. Furthermore, a phylogeny constructed on the basis of the core genes identified from the whole genome analyses indicated that the genus clusters into two monophyletic clades that clearly differ in terms of nucleotide base composition. The G+C content ranges for clade I and II were 48.8-53.1% and 42.1-44.4%, respectively. We therefore suggest that the Geobacillus species currently residing within clade II be considered as a new genus.
KeywordMeSH Terms
Average Nucleotide Identity
Digital DNA–DNA hybridization
Geobacillus
Phylogenomic metrics
Thermophile
Average Nucleotide Identity
Digital DNA–DNA hybridization
Geobacillus
Phylogenomic metrics
Thermophile
Average Nucleotide Identity
Digital DNA–DNA hybridization
Geobacillus
Phylogenomic metrics
Thermophile
Average Nucleotide Identity
Digital DNA–DNA hybridization
Geobacillus
Phylogenomic metrics
Thermophile
Average Nucleotide Identity
Digital DNA–DNA hybridization
Geobacillus
Phylogenomic metrics
Thermophile
Molecular Typing
12759 Euzéby  JP, Tindall  BJ, N/A  N/A,     ( 2004 )

Status of strains that contravene Rules 27(3) and 30 of the Bacteriological Code. Request for an opinion.

International journal of systematic and evolutionary microbiology 54 (Pt 1)
PMID : 14742499 DOI  :   10.1099/ijs.0.03022-0    
Abstract >>
In the period from January 2001, at least 207 new names proposed in articles in the International Journal of Systematic and Evolutionary Microbiology or cited in Validation Lists are not in accordance with Rules 27(3) and 30 of the Bacteriological Code. The purpose of the present Request for an Opinion is to clarify the status of the names listed and to provide a solution whereby they may be considered to be validly published.
KeywordMeSH Terms
Bacteriological Techniques
21941 De Vos, P., and Truper, H.G. "Judicial Commission of the International Committee on Systematic Bacteriology IXth International (IUMS) Congress of Bacteriology and Applied Microbiology. Minutes of the meetings, 14, 15 and 18 August 1999, Sydney, Australia." Int. J. Syst. Evol. Microbiol. (2000) 50:2239-2244. (Note: The name 'Geobacillus kaustophilus' may not be validly published due to the fact that the type strain was not deposited in culture collections in two different countries as required by the emended Bacteriological Code described by De Vos & Truper. Euzeby and Tindall propose a solution for the valid publication of this species.)
9054 VALIDATION LIST No. 28. Int. J. Syst. Bacteriol. (1989) 39:93-94.
9055 Prickett: N.Y. Agric. Exp. Stn. Tech. Bull. (1928) 147: 38. [No PubMed record available.]
2469 Nazina  TN, Tourova  TP, Poltaraus  AB, Novikova  EV, Grigoryan  AA, Ivanova  AE, Lysenko  AM, Petrunyaka  VV, Osipov  GA, Belyaev  SS, Ivanov  MV,     ( 2001 )

Taxonomic study of aerobic thermophilic bacilli: descriptions of Geobacillus subterraneus gen. nov., sp. nov. and Geobacillus uzenensis sp. nov. from petroleum reservoirs and transfer of Bacillus stearothermophilus, Bacillus thermocatenulatus, Bacillus thermoleovorans, Bacillus kaustophilus, Bacillus thermodenitrificans to Geobacillus as the new combinations G. stearothermophilus, G. th.

International journal of systematic and evolutionary microbiology 51 (Pt 2)
PMID : 11321089 DOI  :   10.1099/00207713-51-2-433    
Abstract >>
Five hydrocarbon-oxidizing strains were isolated from formation waters of oilfields in Russia, Kazakhstan and China. These strains were moderately thermophilic, neutrophilic, motile, spore-forming rods, aerobic or facultatively anaerobic. The G+C content of their DNA ranged from 49.7 to 52.3 mol%. The major isoprenoid quinone was menaquinone-7; cellular fatty acid profiles consisted of significant amounts of iso-15:0, iso-16:0 and iso-17:0 fatty acids (61.7-86.8% of the total). Based on data from 16S rDNA analysis and DNA-DNA hybridization, the subsurface isolates could be divided into two groups, one of which consisted of strains UT and X and the other of which consisted of strains K, Sam and 34T. The new strains exhibited a close phylogenetic relationship to thermophilic bacilli of 'Group 5' of Ash et al. [Ash, C., Farrow, J. A. E., Wallbanks, S. & Collins, M. D. (1991). Lett Appl Microbiol 13, 202-206] and a set of corresponding signature positions of 16S rRNA. Comparative analysis of the 16S rDNA sequences and fatty acid compositions of the novel isolates and established species of thermophilic bacilli indicated that the subsurface strains represent two new species within a new genus, for which the names Geobacillus subterraneus gen. nov., sp. nov., and Geobacillus uzenensis sp. nov. are proposed. It is also proposed that Bacillus stearothermophilus, Bacillus thermoleovorans, Bacillus thermocatenulatus, Bacillus kaustophilus, Bacillus thermoglucosidasius and Bacillus thermodenitrificans be transferred to this new genus, with Geobacillus stearothermophilus (formerly Bacillus stearothermophilus) as the type species.
KeywordMeSH Terms
Water Microbiology
3602 Priest  FG, Goodfellow  M, Todd  C,     ( 1988 )

A numerical classification of the genus Bacillus.

Journal of general microbiology 134 (7)
PMID : 3246588 DOI  :   10.1099/00221287-134-7-1847    
Abstract >>
Three hundred and sixty-eight strains of aerobic, endospore-forming bacteria which included type and reference cultures of Bacillus and environmental isolates were studied. Overall similarities of these strains for 118 unit characters were determined by the SSM, SJ and DP coefficients and clustering achieved using the UPGMA algorithm. Test error was within acceptable limits. Six cluster-groups were defined at 70% SSM, which corresponded to 69% SP and 48-57% SJ. Groupings obtained with the three coefficients were generally similar but there were some changes in the definition and membership of cluster-groups and clusters, particularly with the SJ coefficient. The Bacillus strains were distributed among 31 major (4 or more strains), 18 minor (2 or 3 strains) and 30 single-member clusters at the 83% SSM level. Most of these clusters can be regarded as taxospecies. The heterogeneity of several species, including Bacillus brevis, B. circulans, B. coagulans, B. megateriun, B. sphaericus and B. stearothermophilus, has been indicated and the species status of several taxa of hitherto uncertain validity confirmed. Thus on the basis of the numerical phenetic and appropriate (published) molecular genetic data, it is proposed that the following names be recognized; Bacillus flexus (Batchelor) nom. rev., Bacillus fusiformis (Smith et al.) comb. nov., Bacillus kaustophilus (Prickett) nom. rev., Bacillus psychrosaccharolyticus (Larkin & Stokes) nom. rev. and Bacillus simplex (Gottheil) nom. rev. Other phenetically well-defined taxospecies included 'B. aneurinolyticus', 'B. apiarius', 'B. cascainensis', 'B. thiaminolyticus' and three clusters of environmental isolates related to B. firmus and previously described as 'B. firmus-B. lentus intermediates'. Future developments in the light of the numerical phenetic data are discussed.
KeywordMeSH Terms
Mathematical Computing
Numerical Analysis, Computer-Assisted
47987 Sunna, A., Tokaijian, S., Burghardt, J., Rainey, F., Antranikian, G., and Hashwa, F. "Identification of Bacillus kaustophilus, Bacillus thermocatenulatus and Bacillus strain HSR as members of Bacillus thermoleovorans." Syst. Appl. Microbiol. (1997) 20:232-227. [No PubMed record available.]

331, Shih-Pin Rd., Hsinchu 30062, Taiwan

Phone: +886-3-5223191

E-mail: bcrcweb@firdi.org.tw

web maintainance: +886-3-5223191 ext 593

Copyright © 2018.BCRC All rights reserved.The duplication or use of information and data such as texts or images or any linkage the website at the "bcrc.firdi.org.tw" is only permitted with the indication of the source or with prior approval by the BCRC(Bioresource Collection and Research Center).