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The information shown in this page was generated using the cross-referenced linkage within public domain database between their strains and BCRC related strains. Usually the information provided from public domain databases varies with diffent confidences and errors, BCRC provides the related information here at best effort, but BCRC doesn't take the responsibility about the correctness of the information provided here.

Taxonomy Citation ID Reference
51365 Validation List No. 175: "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2017) 67:1095-1098.
48660 Hahnke  RL, Meier-Kolthoff  JP, García-López  M, Mukherjee  S, Huntemann  M, Ivanova  NN, Woyke  T, Kyrpides  NC, Klenk  HP, Göker  M,     ( 2016 )

Genome-Based Taxonomic Classification of Bacteroidetes.

Frontiers in microbiology 7 (N/A)
PMID : 28066339 DOI  :   10.3389/fmicb.2016.02003     PMC  :   PMC5167729    
Abstract >>
The bacterial phylum Bacteroidetes, characterized by a distinct gliding motility, occurs in a broad variety of ecosystems, habitats, life styles, and physiologies. Accordingly, taxonomic classification of the phylum, based on a limited number of features, proved difficult and controversial in the past, for example, when decisions were based on unresolved phylogenetic trees of the 16S rRNA gene sequence. Here we use a large collection of type-strain genomes from Bacteroidetes and closely related phyla for assessing their taxonomy based on the principles of phylogenetic classification and trees inferred from genome-scale data. No significant conflict between 16S rRNA gene and whole-genome phylogenetic analysis is found, whereas many but not all of the involved taxa are supported as monophyletic groups, particularly in the genome-scale trees. Phenotypic and phylogenomic features support the separation of Balneolaceae as new phylum Balneolaeota from Rhodothermaeota and of Saprospiraceae as new class Saprospiria from Chitinophagia. Epilithonimonas is nested within the older genus Chryseobacterium and without significant phenotypic differences; thus merging the two genera is proposed. Similarly, Vitellibacter is proposed to be included in Aequorivita. Flexibacter is confirmed as being heterogeneous and dissected, yielding six distinct genera. Hallella seregens is a later heterotypic synonym of Prevotella dentalis. Compared to values directly calculated from genome sequences, the G+C content mentioned in many species descriptions is too imprecise; moreover, corrected G+C content values have a significantly better fit to the phylogeny. Corresponding emendations of species descriptions are provided where necessary. Whereas most observed conflict with the current classification of Bacteroidetes is already visible in 16S rRNA gene trees, as expected whole-genome phylogenies are much better resolved.
KeywordMeSH Terms
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification
Bacteroidaeota-Rhodothermaeota-Balneolaeota-Chlorobaeota superphylum
G+C content
genome BLAST distance phylogeny
gliding motility
gut microbiome
marine microbiology
one thousand microbial genomes project
phylogenetic classification

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