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Aunpad R,
Panbangred W,
( 2003 ) Cloning and characterization of the constitutively expressed chitinase C gene from a marine bacterium, Salinivibrio costicola strain 5SM-1. PMID : 16233569 : DOI : 10.1016/S1389-1723(04)70145-0 Abstract >>
The chitinase C gene (chiC) encoding chitinase C (ChiC) from Salinivibrio costicola 5SM-1 was cloned and the nucleotide sequence was determined. S. costicola ChiC was expressed constitutively and repressed by glucose. A single operon composed of two complete open reading frames organized in the order of chiB, chiC and one partial open reading frame of chiA was found in the same transcriptional direction. chiC was composed of 2610 bp encoding for 870 amino acids with a calculated molecular mass of 94 kDa including a signal peptide. Analysis of the deduced amino acid sequence alignment revealed a domain structure consisting of an N-terminal catalytic domain, followed by a putative cadherin-like domain and two type 3 chitin-binding domains located at the C terminus. Mutation of three highly conserved amino acid residues, two aspartic acids (Asp-313 and Asp-315) and one glutamic acid (Glu-317) resulted in a complete loss of chitinase activity against colloidal chitin substrate. This suggests that these amino acid residues which reside in the putative catalytic domain play an important role in catalysis. chiB classified as a chitin-binding protein with C-terminal type 3 chitin-binding domain was composed of 390 amino acids with the molecular mass of 43 kDa and does not have any detectable chitinase activity. Chitinase C was identified as an exo-type chitinase releasing chitobiose as a major product from colloidal chitin hydrolysis.
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2. |
Falkenberg P,
Yaguchi M,
Rollin CF,
Matheson AT,
Wydro R,
( 1979 ) The N-terminal sequence of the ribosomal 'A' protein from two moderate halophiles, Vibrio costicola and an unidentified moderate (NRCC 11227). PMID : 454666 : DOI : 10.1016/0005-2795(79)90128-4 Abstract >>
The 'A' protein, equivalent to ribosomal protein EL7/L12 from Escherichia coli, has been isolated and purified from two moderate halophiles Vibrio costicola and NRCC 11227. The 'A' protein from V. costicola contained an N-terminal serine and separated into two forms on DEAE-cellulose and two-dimensional electrophoresis while the equivalent protein in NRCC 11227 contained an N-terminal alanine residue and was present in only one form. The amino acid composition and mobility on two-dimensional gels indicated these proteins were very similar to EL7/L12. The first 38 residues of the 'A' proteins were sequenced and compared to the equivalent protein from E. coli and the extreme halophile Halobacterium cutirubrum. The N-terminal region of the 'A' protein from both moderate halophiles showed substantial homology to EL 12 (75--80%) but no evidence of any homology to the equivalent protein from the extreme halophile. The ribosomal proteins equivalent to ES1A in E. coli were also isolated and their amino acid compositions determined.
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